Package index
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download_all_pathways() - Download all KEGG pathways for a given organism.
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download_kgml() - Download and cache KEGG KGML files.
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get_kegg_db() - Get KEGG db with caching.
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kegg_to_graph() - Convert KEGG pathway to graph
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make_graph_subset() - Create igraph visualization with improved layout
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make_igraph_visualisation() - Plot igraph with improved layout and outlier handling
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make_kegg_visNetwork() - Plot KEGG pathway graph using visNetwork
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map_results_to_graph() - Map differential expression results to nodes
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reset_cache() - Reset KEGG and mapping caches by deleting all cached files
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return_all_cached() - Return all cached KEGG and mapping files from BiocFileCache